flowcraft.templates package

Subpackages

• flowcraft.templates.flowcraft_utils package
  • Submodules
    • flowcraft.templates.flowcraft_utils.flowcraft_base module
  • Module contents

Submodules

• flowcraft.templates.assembly_report module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.fastqc module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.fastqc_report module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.integrity_coverage module
• flowcraft.templates.mapping2json module
• flowcraft.templates.mashdist2json module
  • Purpose
  • Expected input
  • Code documentation
• flowcraft.templates.mashscreen2json module
• flowcraft.templates.megahit module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.metaspades module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.pATLAS_consensus_json module
  • Purpose
  • Expected input
  • Code documentation
• flowcraft.templates.pipeline_status module
  • Purpose
  • Expected input
  • Code documentation
• flowcraft.templates.process_abricate module
• flowcraft.templates.process_assembly module
• flowcraft.templates.process_assembly_mapping module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.skesa module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.spades module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.trimmomatic module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation
• flowcraft.templates.trimmomatic_report module
  • Purpose
  • Expected input
  • Generated output
  • Code documentation

Module contents

Placeholder for template generation docs