fast_ani¶
Purpose¶
This component performs pairwise comparisons between fastas, given a multifasta as input for fastANI. It will split the multifasta into single fastas that will then be provided as a matrix. The output will be the all pairwise comparisons that pass the minimum of 50 aligned sequences with a default length of 200 bp.
Input/Output type¶
- Input type:
fasta
- Output type:
None
Parameters¶
fragLen
: Sets the minimum size of the fragment to be passed to
–fragLen argument of fastANI.
Published results¶
results/fast_ani/
: A text file with the extension .out, which has all
the pairwise comparisons between sequences, reporting ANI.
Published reports¶
None.
Default directives¶
fastAniMatrix
:container
: flowcraft/fast_aniversion
: 1.1.0-2cpus
: 20memory
: { 30.GB * task.attempt }