flowcraft package¶
Subpackages¶
- flowcraft.generator package
- Subpackages
- flowcraft.generator.components package
- Submodules
- flowcraft.generator.components.annotation module
- flowcraft.generator.components.assembly module
- flowcraft.generator.components.assembly_processing module
- flowcraft.generator.components.distance_estimation module
- flowcraft.generator.components.downloads module
- flowcraft.generator.components.metagenomics module
- flowcraft.generator.components.mlst module
- flowcraft.generator.components.patlas_mapping module
- flowcraft.generator.components.reads_quality_control module
- flowcraft.generator.components.typing module
- Module contents
- Submodules
- flowcraft.generator.components package
- Submodules
- flowcraft.generator.engine module
- flowcraft.generator.error_handling module
- flowcraft.generator.footer_skeleton module
- flowcraft.generator.header_skeleton module
- flowcraft.generator.inspect module
- flowcraft.generator.pipeline_parser module
- flowcraft.generator.process module
- flowcraft.generator.process_details module
- flowcraft.generator.recipe module
- Module contents
- Subpackages
- flowcraft.templates package
- Subpackages
- Submodules
- flowcraft.templates.assembly_report module
- flowcraft.templates.fastqc module
- flowcraft.templates.fastqc_report module
- flowcraft.templates.integrity_coverage module
- flowcraft.templates.mapping2json module
- flowcraft.templates.mashdist2json module
- flowcraft.templates.mashscreen2json module
- flowcraft.templates.megahit module
- flowcraft.templates.metaspades module
- flowcraft.templates.pATLAS_consensus_json module
- flowcraft.templates.pipeline_status module
- flowcraft.templates.process_abricate module
- flowcraft.templates.process_assembly module
- flowcraft.templates.process_assembly_mapping module
- flowcraft.templates.skesa module
- flowcraft.templates.spades module
- flowcraft.templates.trimmomatic module
- flowcraft.templates.trimmomatic_report module
- Module contents
- flowcraft.tests package