metamlst¶
Purpose¶
Checks the ST of metagenomic reads using mlst.
Note
Software page: https://bitbucket.org/CibioCM/metamlst
Input/Output type¶
- Input type:
FastQ
- Output type: None
Note
The default input parameter for fastq data is --fastq
.
Parameters¶
metamlstDB
: Specifiy the metamlst database (full path) for MLST checkingmetamlstDB_index
: Specifiy the Bowtie2 metamlst database index (full path) for MLST checking
Published results¶
results/annotation/metamlst
: Stores the results of the ST for each sample.
Published reports¶
None.
Default directives¶
container
: flowcraft/metamlstversion
: 1.1-1memory
: 4.Gb * task.attempt